Building on bremusa.ocamllabs.io
(from ocaml/opam:debian-unstable)
Unable to find image 'ocaml/opam:debian-unstable' locally
debian-unstable: Pulling from ocaml/opam
60323882a665: Pulling fs layer
60323882a665: Verifying Checksum
60323882a665: Download complete
60323882a665: Pull complete
Digest: sha256:326388062fdc5e366d0d25a65b42bf9938e76068527b8aceec3027158b383b3c
Status: Downloaded newer image for ocaml/opam:debian-unstable
2025-05-13 23:24.13 ---> using "0acd5aeaa8f7bc314514d9795d14a7f12ec72a6a5b11c5904350189734c6859b" from cache
/: (user (uid 1000) (gid 1000))
/: (env OPAMPRECISETRACKING 1)
/: (env OPAMUTF8 never)
/: (env OPAMEXTERNALSOLVER builtin-0install)
/: (env OPAMCRITERIA +removed)
/: (env CI true)
/: (env OPAM_HEALTH_CHECK_CI true)
/: (run (shell "sudo ln -f /usr/bin/opam-dev /usr/bin/opam"))
2025-05-13 23:24.13 ---> using "40df4fa4cdfc68a5fa7a326047e82a7adc5df52b8059d4a7b745bdd50aad56e7" from cache
/: (run (network host)
(shell "rm -rf ~/opam-repository && git clone -q 'https://github.com/ocaml/opam-repository' ~/opam-repository && git -C ~/opam-repository checkout -q dbc9ec7b83bac3673185542221a571372b6abb35"))
2025-05-13 23:24.13 ---> using "20357fbea61a92c2bdc1950610fb370ec30d4b4205b6f85be61a0d5ad16763e4" from cache
/: (run (shell "rm -rf ~/.opam && opam init -ya --bare --config ~/.opamrc-sandbox ~/opam-repository"))
Configuring from /home/opam/.opamrc-sandbox, then /home/opam/.opamrc, and finally from built-in defaults.
Checking for available remotes: rsync and local, git.
- you won't be able to use mercurial repositories unless you install the hg command on your system.
- you won't be able to use darcs repositories unless you install the darcs command on your system.
<><> Fetching repository information ><><><><><><><><><><><><><><><><><><><><><>
[default] Initialised
User configuration:
~/.profile is already up-to-date.
[NOTE] Make sure that ~/.profile is well sourced in your ~/.bashrc.
2025-05-13 23:24.13 ---> using "23658a5df8af9828e8d43700cc875c3ea271dfcb3ba9fa82b2220e54a557e121" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "sudo apt update && sudo apt install autoconf -y"))
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Get:1 http://deb.debian.org/debian unstable InRelease [205 kB]
Get:2 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-05-13-2007.41-F-2025-05-11-0804.30.pdiff [49.0 kB]
Get:3 http://deb.debian.org/debian unstable/main amd64 Packages T-2025-05-13-2007.41-F-2025-05-11-0804.30.pdiff [49.0 kB]
Fetched 318 kB in 2s (128 kB/s)
Reading package lists...
Building dependency tree...
Reading state information...
3 packages can be upgraded. Run 'apt list --upgradable' to see them.
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Reading package lists...
Building dependency tree...
Reading state information...
Installing:
autoconf
Installing dependencies:
automake autotools-dev m4
Suggested packages:
autoconf-archive gnu-standards autoconf-doc libtool gettext m4-doc
Summary:
Upgrading: 0, Installing: 4, Removing: 0, Not Upgrading: 3
Download size: 1710 kB
Space needed: 5051 kB / 185 GB available
Get:1 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB]
Get:2 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB]
Get:3 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get:4 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB]
Fetched 1710 kB in 0s (8714 kB/s)
Selecting previously unselected package m4.
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Preparing to unpack .../archives/m4_1.4.19-8_amd64.deb ...
Unpacking m4 (1.4.19-8) ...
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Preparing to unpack .../autoconf_2.72-3.1_all.deb ...
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Preparing to unpack .../autotools-dev_20240727.1_all.deb ...
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Selecting previously unselected package automake.
Preparing to unpack .../automake_1%3a1.17-4_all.deb ...
Unpacking automake (1:1.17-4) ...
Setting up m4 (1.4.19-8) ...
Setting up autotools-dev (20240727.1) ...
Setting up autoconf (2.72-3.1) ...
Setting up automake (1:1.17-4) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
2025-05-13 23:24.13 ---> using "7500090cc9af80f322654254041f3fc602ac6ff9f4e9777943eb82a6c52ee3cc" from cache
/: (run (network host)
(shell "git clone -q 'https://github.com/janestreet/opam-repository' ~/'janestreet-with-extensions' && git -C ~/'janestreet-with-extensions' checkout -q 9fcba8f2828b1dd4de45313c7d472a9a0f1b55e7"))
2025-05-13 23:24.13 ---> using "b59a36de54dea5e80e8207f314640093212b667aab8294c8e5e29f555ddd3d36" from cache
/: (run (shell "opam repository add --dont-select 'janestreet-with-extensions' ~/'janestreet-with-extensions'"))
[janestreet-with-extensions] Initialised
2025-05-13 23:24.13 ---> using "10fe936c9d1e16eabb942356f07b8a169382f09aa6865fe5b5aff4658669e1b4" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam switch create --repositories=janestreet-with-extensions,default '5.2.0+flambda2' '5.2.0+flambda2'"))
<><> Installing new switch packages <><><><><><><><><><><><><><><><><><><><><><>
Switch invariant: ["ocaml-variants" {= "5.2.0+flambda2"}]
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> installed base-bigarray.base
-> installed base-threads.base
-> installed base-unix.base
-> retrieved init-compiler.4.14.1 (cached)
-> retrieved ocaml-config.3 (cached)
-> installed ocaml-options-vanilla.1
-> retrieved init-dune.3.9.3 (cached)
-> retrieved init-menhir.20231231 (cached)
-> retrieved ocaml-variants.5.2.0+flambda2 (cached)
-> installed init-compiler.4.14.1
-> installed init-dune.3.9.3
-> installed init-menhir.20231231
-> installed ocaml-variants.5.2.0+flambda2
-> installed ocaml-config.3
-> installed ocaml.5.2.0
-> installed base-domains.base
-> installed base-nnp.base
Done.
# To update the current shell environment, run: eval $(opam env --switch=5.2.0+flambda2)
2025-05-13 23:24.13 ---> using "9f23afe31887703a43d49f189611b0f7e2f0becabaae5932d8d0b25ddd85cc79" from cache
/: (run (network host)
(shell "opam update --depexts"))
+ /usr/bin/sudo "apt-get" "update"
- Hit:1 http://deb.debian.org/debian unstable InRelease
- Reading package lists...
-
2025-05-13 23:24.13 ---> using "87e27a9fa6d806fc35e8b46f539fdf3d7c669955ce3150e27e16209fde14592a" from cache
/: (run (cache (opam-archives (target /home/opam/.opam/download-cache)))
(network host)
(shell "opam remove -y conf-rdkit.1\
\nopam install -vy conf-rdkit.1\
\nres=$?\
\nif [ $res = 31 ]; then\
\n if opam show -f x-ci-accept-failures: conf-rdkit.1 | grep -q 'debian-unstable'; then\
\n echo \"This package failed and has been disabled for CI using the 'x-ci-accept-failures' field.\"\
\n exit 69\
\n fi\
\nfi \
\n\
\n\
\nexit $res"))
[NOTE] conf-rdkit.1 is not installed.
Nothing to do.
The following actions will be performed:
=== install 1 package
- install conf-rdkit 1
The following system packages will first need to be installed:
librdkit-dev python3-rdkit
<><> Handling external dependencies <><><><><><><><><><><><><><><><><><><><><><>
opam believes some required external dependencies are missing. opam can:
> 1. Run apt-get to install them (may need root/sudo access)
2. Display the recommended apt-get command and wait while you run it manually (e.g. in another terminal)
3. Continue anyway, and, upon success, permanently register that this external dependency is present, but not detectable
4. Abort the installation
[1/2/3/4] 1
+ /usr/bin/sudo "apt-get" "install" "-qq" "-yy" "librdkit-dev" "python3-rdkit"
- Preconfiguring packages ...
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- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
- Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
- Unpacking libreadline8t64:amd64 (8.2-6) ...
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- Selecting previously unselected package python3.13.
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- Unpacking python3.13 (3.13.3-2) ...
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- Setting up python3-minimal (3.13.3-1) ...
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- Preparing to unpack .../00-python3_3.13.3-1_amd64.deb ...
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- Selecting previously unselected package python3-numpy-dev:amd64.
- Preparing to unpack .../01-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ...
- Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ...
- Selecting previously unselected package libblas3:amd64.
- Preparing to unpack .../02-libblas3_3.12.1-2_amd64.deb ...
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- Selecting previously unselected package libgfortran5:amd64.
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- Selecting previously unselected package liblapack3:amd64.
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- Unpacking liblapack3:amd64 (3.12.1-2) ...
- Selecting previously unselected package python3-numpy.
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- Selecting previously unselected package fonts-dejavu-mono.
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- Selecting previously unselected package libmaeparser1:amd64.
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- Unpacking libmaeparser1:amd64 (1.3.1-1+b2) ...
- Selecting previously unselected package librdkit1t64.
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- Unpacking librdkit1t64 (202503.1-4) ...
- Selecting previously unselected package librdkit-dev.
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- Unpacking librdkit-dev (202503.1-4) ...
- Selecting previously unselected package rdkit-data.
- Preparing to unpack .../27-rdkit-data_202503.1-4_all.deb ...
- Unpacking rdkit-data (202503.1-4) ...
- Selecting previously unselected package python3-rdkit.
- Preparing to unpack .../28-python3-rdkit_202503.1-4_amd64.deb ...
- Unpacking python3-rdkit (202503.1-4) ...
- Setting up media-types (13.0.0) ...
- Setting up libboost-python1.83.0 (1.83.0-4.2) ...
- Setting up libpixman-1-0:amd64 (0.44.0-3) ...
- Setting up libxrender1:amd64 (1:0.9.12-1) ...
- Setting up libxcb-render0:amd64 (1.17.0-2+b1) ...
- Setting up fonts-freefont-ttf (20211204+svn4273-2) ...
- Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ...
- Setting up rdkit-data (202503.1-4) ...
- Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.2) ...
- Setting up libboost-numpy1.83.0 (1.83.0-4.2) ...
- Setting up libblas3:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
- Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2) ...
- Setting up fonts-dejavu-mono (2.37-8) ...
- Setting up libpng16-16t64:amd64 (1.6.48-1) ...
- Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ...
- Setting up fonts-dejavu-core (2.37-8) ...
- Setting up libgfortran5:amd64 (14.2.0-19) ...
- Setting up libcoordgen3:amd64 (3.0.2-1+b2) ...
- Setting up libinchi1.07 (1.07.3+dfsg-1) ...
- Setting up readline-common (8.2-6) ...
- Setting up liblapack3:amd64 (3.12.1-2) ...
- update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
- Setting up fontconfig-config (2.15.0-2.3) ...
- Setting up libmaeparser1:amd64 (1.3.1-1+b2) ...
- Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
- Setting up libreadline8t64:amd64 (8.2-6) ...
- Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
- Setting up libpython3.13-stdlib:amd64 (3.13.3-2) ...
- Setting up libpython3-stdlib:amd64 (3.13.3-1) ...
- Setting up python3.13 (3.13.3-2) ...
- Setting up python3 (3.13.3-1) ...
- running python rtupdate hooks for python3.13...
- running python post-rtupdate hooks for python3.13...
- Setting up libcairo2:amd64 (1.18.4-1+b1) ...
- Setting up python3-numpy (1:2.2.4+ds-1) ...
- Setting up librdkit1t64 (202503.1-4) ...
- Setting up python3-rdkit (202503.1-4) ...
- Setting up librdkit-dev (202503.1-4) ...
- Processing triggers for libc-bin (2.41-7) ...
<><> Processing actions <><><><><><><><><><><><><><><><><><><><><><><><><><><><>
-> retrieved conf-rdkit.1 (cached)
Processing 2/3: [conf-rdkit: sh]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "sh" "-c" "c++ test.cpp -o test -I/usr/include/rdkit -lRDKitRDGeneral -DSWIG || c++ test.cpp -o test -I/usr/include/rdkit -lRDGeneral -DSWIG" (CWD=/home/opam/.opam/5.2.0+flambda2/.opam-switch/build/conf-rdkit.1)
Processing 2/3: [conf-rdkit: ./test]
+ /home/opam/.opam/opam-init/hooks/sandbox.sh "build" "./test" (CWD=/home/opam/.opam/5.2.0+flambda2/.opam-switch/build/conf-rdkit.1)
- 2025.03.1
-> compiled conf-rdkit.1
-> installed conf-rdkit.1
Done.
# To update the current shell environment, run: eval $(opam env)
2025-05-13 23:24.51 ---> saved as "df183603b7fb72083cef098124cface2d4892b6a2913e79ee1a2269d621bef25"
Job succeeded
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